SachinGawande2003/biomcp
BioMCP - Comprehensive MCP server for bioinformatics and life sciences
Platform-specific configuration:
{
"mcpServers": {
"biomcp": {
"command": "npx",
"args": [
"-y",
"biomcp"
]
}
}
}Add the config above to .claude/settings.json under the mcpServers key.
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[](https://opensource.org/licenses/MIT) [](https://www.python.org/downloads/) [](https://modelcontextprotocol.io) [](#tools-27-total) [](#databases)
The most comprehensive Model Context Protocol server for life sciences. Connect Claude to every major biological database and state-of-the-art AI models — no API wrappers, no copy-pasting, just science.
🚀 Quick Start • 🔧 Tools • 📊 Databases • 💡 Examples • 🤝 Contributing
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BioMCP bridges Claude and the world's life sciences databases through the Model Context Protocol. Ask Claude to search PubMed, predict protein structure with AI, generate DNA sequences, find drug targets, query clinical trials, analyze single-cell data, or generate research hypotheses — all in natural language, all in real time.
You → "What drugs target EGFR and what clinical trials are recruiting?"
Claude + BioMCP → Queries ChEMBL + ClinicalTrials.gov simultaneously → Structured answer---
| Tool | Description | |------|-------------| | search_pubmed | Full PubMed search with MeSH, Boolean, field tags. Returns abstracts, authors, DOIs | | get_gene_info | NCBI Gene: symbol, location, aliases, RefSeq IDs, functional summary | | run_blast | NCBI BLAST alignment (blastp/blastn/blastx/tblastn) — async, non-blocking |
| Tool | Description | |------|-------------|
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